I prefer a FS, but I also have a rigid (that cost me next to nothing). So, if you have the room for it, having a second bike that better suits the job won't be too costly.
But I like to ride the FS for comfort, and with little room on the frame to carry gear, for the long trips I like to use a trailer.
I load most of my gear on it to keep the bike light, then I leave the trailer at camp to ride some trails. I think this works well.
But like Toby said, on the straight rides, I don't notice the trailer. Turning with it will take some getting used to, tho. (hint) It seems that packing the weight toward the back of the trailer handles better.
Another cheap and easy option- a back pack. I pack my gear in one, I just prefer to haul it on the trailer.
In the end- what ever gets you on the trails is the best idea.